About

Marine Data Mobilization Workshop for Biology and Ecosystem Essential Ocean Variables (Bio-Eco EOV) is a Contribution to the UN Decade on Ocean Science for Sustainable Development and the Marine Life 2030 Decade Action. The workshop is jointly hosted by CIOOS, IOOS, Hakai, MBON, OBIS-USA, and OTN.

This workshop is a small hands-on, interactive virtual workshop focused on mobilizing marine biological observation datasets to the Ocean Biodiversity Information System (OBIS) by helping data providers standardize their data using Darwin Core. This includes species observations from any type of sampling methodologies (e.g. visual surveys, net tows, microscopy, fish trawls, imaging, `omics, acoustics, telemetry).

The workshop will be organized based on the sections described on the schedule. We will spend 5 - 10 minutes presenting each section and then the rest of the time will be spent in breakout rooms working on your data.

Overview

Click on the to be taken the relevant section of this workshop from this overview figure highlighting various resources used for core processes:

Breakout Rooms

The breakout rooms are organized into topics based on the Darwin Core mobilization activity you plan to work on. Below are the breakout rooms and their descriptions:

Breakout Room Description Workshop material link
Darwin Core Terms Identifying appropriate Darwin Core terms for your data. workshop material link
Date Formatting Formatting your dates to ISO-8601. workshop material link
Lat/Lon Conversions Converting your latitude and longitude to decimal degrees north and east. workshop material link
WoRMS lookup Matching your scientific names to the World Register of Marine Species. workshop material link
QA/QC Checking your data for any high level issues. workshop material link
Metadata+Publishing (EML+IPT) Collecting appropriate metadata to document your data. workshop material link
Darwin Core and Extension Schemas Organizing your data between cores and extensions. workshop material link

Datasets Published

Below is a list of datasets that have been published as a result of these workshops.

Title Dataset GitHub Issue GBIF link OBIS link OBIS-USA IPT
MARINe/PISCO: Intertidal: MARINe Coastal Biodiversity Surveys: Swath Surveys Summarized https://github.com/ioos/bio_data_guide/issues/244 https://www.gbif.org/dataset/fdcdc447-2032-4edf-9519-0ec89ae1b9c5 https://obis.org/dataset/30884b6c-e8e1-453c-af20-7ed8318489c6 https://ipt-obis.gbif.us/resource?r=marine_cbs_swath_surveys
MARINe/PISCO: Intertidal: MARINe Coastal Biodiversity Surveys: Point Contact Surveys Summarized https://github.com/ioos/bio_data_guide/issues/165 https://www.gbif.org/dataset/58ffefab-20aa-4cec-b0c0-dd7330ed7280 https://obis.org/dataset/bb638343-bbc9-464d-88d8-18d9ba29ecdd https://ipt-obis.gbif.us/resource?r=marine_cbs_point_contact_surveys
COI data from: Environmental DNA metabarcoding differentiates between micro-habitats within the rocky intertidal (Shea & Boehm, 2024) https://github.com/ioos/bio_data_guide/issues/258 https://www.gbif.org/dataset/9358fbd7-cfd0-4eab-99fa-0934396a0529 https://obis.org/dataset/54bc0e9c-e857-4216-a6ce-46cd6ae58cd7 https://ipt-obis.gbif.us/resource?r=shea_boehm_2024
Sanctuary Soundscape Monitoring Project (SanctSound) Daily Aggregated Species Detections https://github.com/ioos/bio_data_guide/issues/147 https://www.gbif.org/dataset/b3fc1d76-a50d-4a57-a2f3-425adfc59f9f https://obis.org/dataset/7a4427f6-67ee-4cc1-b95f-3045523420a1 https://ipt-obis.gbif.us/resource?r=noaa_sanctsound_daily_species
Time series of zooplankton abundance in the Florida Keys, collected by the South Florida Program (NOAA/AOML) and the Marine Biodiversity Observation Network (MBON) https://github.com/ioos/bio_data_guide/issues/136 https://www.gbif.org/dataset/ec0d2fe8-21b1-4ab1-8b91-67873e8ca912 https://obis.org/dataset/afef5da2-614b-4208-aee6-c2413ed5ab76 https://ipt-obis.gbif.us/resource?r=sfmbon_zooplankton